National Academy of Agricultural Sciences (NAAS)
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PRINT ISSN : 2319-7692 Online ISSN : 2319-7706 Issues : 12 per year Publisher : Excellent Publishers Email : editorijcmas@gmail.com / submit@ijcmas.com Editor-in-chief: Dr.M.Prakash Index Copernicus ICV 2018: 95.39 NAAS RATING 2020: 5.38 |
In order to optimize protein production in expression systems, analysis of codon usage patterns is very important. In this regard, chloroplast has special importance due to its small size and high copy number of genome. Vitis vinifera is the most important fruit species in the modern world. In this research, the complete nucleotide sequence of the chloroplast genome in Vitis vinifera was studied, and then analyzed using CodonW software. Correspondence analysis and method of effective number of codon as Nc-plot were conducted to analyze synonymous codon usage. According to the corresponding analysis, codon bias in the chloroplast genome of Vitis vinifera is related to their gene length, mutation bias, gene hydropathy level of each protein, gene function and selection or gene expression only subtly affect codon usage. This study provides insights into the molecular evolution studies.
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